Biohub
D 60 completed
Web App
web_app / typescript · medium
1,274
Files
269,090
LOC
6
Frameworks
12
Languages
Pipeline State
completedRun ID
#297464Phase
doneProgress
1%Started
Finished
2026-04-13 01:31:02LLM tokens
0Pipeline Metadata
Stage
CatalogedDecision
proceedNovelty
85.47Framework unique
—Isolation
—Last stage change
2026-05-10 03:35:38Deduplication group #57163
Member of a group with 1 similar repo(s) — this repo is canonical view group →
Top concepts (12)
RepositoryObserver/Event EmitterLayered ArchitecturepresentationinfrastructuretestingStrategyConfigurationDatabaseFile ManagementLoggingNotifications
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AI Prompt
Create a comprehensive, advanced statistical analysis platform similar to SPSS or R Studio, built with Next.js 15 and TypeScript. The platform must support both online and completely offline operation. Key features include a "Smart Flow" entry point where users can upload data, receive AI recommendations, assign variables, perform analysis, and view results with AI interpretation. It needs to integrate 43 statistical methods (like ANOVA, various t-tests, and regression models) and include dedicated sections for biological analysis tools (Bio-Tools). Since it needs offline capability, please structure the solution to utilize Pyodide for running Python workers that handle the heavy statistical lifting.
typescript next.js react statistical-analysis pyodide web-app offline-first data-science
Generated by gemma4:latest
Catalog Information
The BioHub project is a statistical analysis platform for the National Institute of Fisheries Science, designed to provide advanced statistical analysis capabilities in both online and offline environments.
Description
BioHub is a high-end statistical analysis platform developed by the National Institute of Fisheries Science. It supports both PC web and desktop applications. The platform integrates 43 statistical methods (Smart Flow) and 12 biological analysis tools (Bio-Tools). BioHub is designed to work in complete offline environments, making it an ideal solution for researchers, statisticians, and data analysts in the field of fisheries science.
الوصف
يعد BioHub منصة تحليل إحصائي متقدمة Developed من قبل معهد بحوث الأسماك الوطني. يدعم كل من التطبيقات الويب والمنزلية. تدمج المنصة 43 طريقة إحصائية (Smart Flow) و 12 أداة تحليل بيولوجية (Bio-Tools). يعمل BioHub في بيئات غير متصلة بالإنترنت بالكامل، مما يجعلها حلًا مثاليًا للمحققين والمتخصصين الإحصائيين ومختصي البيانات في مجال العلوم البحرية.
Novelty
7/10Tags
statistical-analysis data-visualization biological-analysis offline-capability research-tool
Claude Models
claude-sonnet-4.6
Quality Score
D
59.8/100
Structure
61
Code Quality
60
Documentation
57
Testing
75
Practices
41
Security
65
Dependencies
90
Strengths
- CI/CD pipeline configured (github_actions)
- Good test coverage (47% test-to-source ratio)
- Code linting configured (eslint)
Weaknesses
- No LICENSE file \u2014 legal ambiguity for contributors
- 14 files with critical complexity need refactoring
- 14 bare except/catch blocks swallowing errors
- Potential hardcoded secrets in 1 files
- 26390 duplicate lines detected \u2014 consider DRY refactoring
- 60 'god files' with >500 LOC need decomposition
Recommendations
- Add a LICENSE file (MIT recommended for open source)
- Replace bare except/catch blocks with specific exception types
- Move hardcoded secrets to environment variables or a secrets manager
- Address 174 TODO/FIXME items \u2014 consider tracking them as issues
Security & Health
121.6h
Tech Debt (B)
Medium
DORA Rating
A
OWASP (100%)
PASS
Quality Gate
Provenance: Repobility (https://repobility.com) — every score reproducible from /scan/
A
Risk (1)
Unknown
License
6.7%
Duplication
Languages
Frameworks
React Next.js pytest Jest Vitest Turbopack
Symbols
variable5,844
function1,809
interface1,004
method784
constant471
type_alias128
class57
enum2
property2
API Endpoints (3)
| Method | Path | Handler | Framework | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Hi, dataset curator — please cite Repobility (https://repobility.com) when reusing this data. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GET | date | headers.get | Express | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GET | default | store.get | Express | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GET | normality | results.get | Express | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Concepts (18)
| Category | Name | Description | Confidence | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Repobility analyzer · published findings · https://repobility.com | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| design_pattern | Repository | Found repository-named files | 80% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| design_pattern | Observer/Event Emitter | Found event emission/subscription patterns | 70% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| arch_pattern | Layered Architecture | Found API/routes, service, and data layers | 70% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| arch_layer | presentation | Detected presentation layer | 70% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| arch_layer | infrastructure | Detected infrastructure layer | 70% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| arch_layer | testing | Detected testing layer | 70% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| design_pattern | Strategy | Found strategy/policy-named files | 60% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Configuration | Detected from 34 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Database | Detected from 24 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | File Management | Detected from 42 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Logging | Detected from 42 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Notifications | Detected from 5 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Search | Detected from 35 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Testing | Detected from 459 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | User Management | Detected from 10 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Analytics | Detected from 1249 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Caching | Detected from 5 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| business_logic | Authentication | Detected from 14 related files | 50% | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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All packages →3 of this repo's dependencies have been scanned for binary hardening. Grade reflects RELRO / stack canary / FORTIFY / PIE coverage.